J3_4UJC_010

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UG*CGACC*GA

Length

9 nucleotides

Bulged bases

4UJC|1|A2|G|2563, 4UJC|1|A2|C|2565

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|U|2552
4UJC|1|A2|G|2553
*
4UJC|1|A2|C|2562
4UJC|1|A2|G|2563
4UJC|1|A2|A|2564
4UJC|1|A2|C|2565
4UJC|1|A2|C|2566
*
4UJC|1|A2|G|2733
4UJC|1|A2|A|2734

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BZ

60S RIBOSOMAL PROTEIN L27

Chain Bg

60S RIBOSOMAL PROTEIN L34

Chain Bk

60S RIBOSOMAL PROTEIN L38