J3_4UJC_030
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- UUGAAAAGAACUUU*AGAGAGUUCAAGAGGGCGUGAAACCG*CGGUGGAUCA
- Length
- 50 nucleotides
- Bulged bases
- 4UJC|1|A2|A|380, 4UJC|1|A2|G|400, 4UJC|1|A2|G|404
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJC|1|A2|U|371
4UJC|1|A2|U|372
4UJC|1|A2|G|373
4UJC|1|A2|A|374
4UJC|1|A2|A|375
4UJC|1|A2|A|376
4UJC|1|A2|A|377
4UJC|1|A2|G|378
4UJC|1|A2|A|379
4UJC|1|A2|A|380
4UJC|1|A2|C|381
4UJC|1|A2|U|382
4UJC|1|A2|U|383
4UJC|1|A2|U|384
*
4UJC|1|A2|A|389
4UJC|1|A2|G|390
4UJC|1|A2|A|391
4UJC|1|A2|G|392
4UJC|1|A2|A|393
4UJC|1|A2|G|394
4UJC|1|A2|U|395
4UJC|1|A2|U|396
4UJC|1|A2|C|397
4UJC|1|A2|A|398
4UJC|1|A2|A|399
4UJC|1|A2|G|400
4UJC|1|A2|A|401
4UJC|1|A2|G|402
4UJC|1|A2|G|403
4UJC|1|A2|G|404
4UJC|1|A2|C|405
4UJC|1|A2|G|406
4UJC|1|A2|U|407
4UJC|1|A2|G|408
4UJC|1|A2|A|409
4UJC|1|A2|A|410
4UJC|1|A2|A|411
4UJC|1|A2|C|412
4UJC|1|A2|C|413
4UJC|1|A2|G|414
*
4UJC|1|A3|C|11
4UJC|1|A3|G|12
4UJC|1|A3|G|13
4UJC|1|A3|U|14
4UJC|1|A3|G|15
4UJC|1|A3|G|16
4UJC|1|A3|A|17
4UJC|1|A3|U|18
4UJC|1|A3|C|19
4UJC|1|A3|A|20
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
- Chain A3
- 5.8S RIBOSOMAL RNA
Nearby chains
- Chain BC
- 60S RIBOSOMAL PROTEIN L4
- Chain BP
- 60S RIBOSOMAL PROTEIN L17
- Chain BY
- 60S RIBOSOMAL PROTEIN L26
- Chain Be
- 60S RIBOSOMAL PROTEIN L32
- Chain Bl
- 60S RIBOSOMAL PROTEIN L39
Coloring options: