J3_4UJC_031

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGGUCCGCGCAGUCC*GGUGCG*CGACGUCGGCUACC

Length

35 nucleotides

Bulged bases

4UJC|1|A2|U|436, 4UJC|1|A2|G|441, 4UJC|1|A2|C|1281, 4UJC|1|A2|U|1282, 4UJC|1|A2|A|1283

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|G|433
4UJC|1|A2|G|434
4UJC|1|A2|G|435
4UJC|1|A2|U|436
4UJC|1|A2|C|437
4UJC|1|A2|C|438
4UJC|1|A2|G|439
4UJC|1|A2|C|440
4UJC|1|A2|G|441
4UJC|1|A2|C|442
4UJC|1|A2|A|443
4UJC|1|A2|G|444
4UJC|1|A2|U|445
4UJC|1|A2|C|446
4UJC|1|A2|C|447
*
4UJC|1|A2|G|688
4UJC|1|A2|G|689
4UJC|1|A2|U|690
4UJC|1|A2|G|691
4UJC|1|A2|C|692
4UJC|1|A2|G|693
*
4UJC|1|A2|C|1272
4UJC|1|A2|G|1273
4UJC|1|A2|A|1274
4UJC|1|A2|C|1275
4UJC|1|A2|G|1276
4UJC|1|A2|U|1277
4UJC|1|A2|C|1278
4UJC|1|A2|G|1279
4UJC|1|A2|G|1280
4UJC|1|A2|C|1281
4UJC|1|A2|U|1282
4UJC|1|A2|A|1283
4UJC|1|A2|C|1284
4UJC|1|A2|C|1285

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain BE

60S RIBOSOMAL PROTEIN L6

Chain Be

60S RIBOSOMAL PROTEIN L32

Chain Bf

60S RIBOSOMAL PROTEIN L35A

Chain Bt

60S RIBOSOMAL PROTEIN L28