Loop J3_4UJC

3D structure

PDB id: 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
Description: mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
Experimental method: ELECTRON MICROSCOPY
Resolution: 9.5 Å

Loop

Sequence: CGCGACCGGC*GCCGAGGGAGCGAGACCCGUCGC*GCGCACGGGGUCGGCG
Length: 49 nucleotides
Bulged bases: 4UJC|1|A2|G|941, 4UJC|1|A2|A|944, 4UJC|1|A2|A|950, 4UJC|1|A2|G|1262
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4UJC|1|A2|C|695
4UJC|1|A2|G|696
4UJC|1|A2|C|697
4UJC|1|A2|G|698
4UJC|1|A2|A|699
4UJC|1|A2|C|700
4UJC|1|A2|C|701
4UJC|1|A2|G|702
4UJC|1|A2|G|703
4UJC|1|A2|C|704
*
4UJC|1|A2|G|936
4UJC|1|A2|C|937
4UJC|1|A2|C|938
4UJC|1|A2|G|939
4UJC|1|A2|A|940
4UJC|1|A2|G|941
4UJC|1|A2|G|942
4UJC|1|A2|G|943
4UJC|1|A2|A|944
4UJC|1|A2|G|945
4UJC|1|A2|C|946
4UJC|1|A2|G|947
4UJC|1|A2|A|948
4UJC|1|A2|G|949
4UJC|1|A2|A|950
4UJC|1|A2|C|951
4UJC|1|A2|C|952
4UJC|1|A2|C|953
4UJC|1|A2|G|954
4UJC|1|A2|U|955
4UJC|1|A2|C|956
4UJC|1|A2|G|957
4UJC|1|A2|C|958
*
4UJC|1|A2|G|1255
4UJC|1|A2|C|1256
4UJC|1|A2|G|1257
4UJC|1|A2|C|1258
4UJC|1|A2|A|1259
4UJC|1|A2|C|1260
4UJC|1|A2|G|1261
4UJC|1|A2|G|1262
4UJC|1|A2|G|1263
4UJC|1|A2|G|1264
4UJC|1|A2|U|1265
4UJC|1|A2|C|1266
4UJC|1|A2|G|1267
4UJC|1|A2|G|1268
4UJC|1|A2|C|1269
4UJC|1|A2|G|1270

Current chains

Chain A2: 28S RIBOSOMAL RNA

Nearby chains

Chain BC: 60S RIBOSOMAL PROTEIN L4
Chain BE: 60S RIBOSOMAL PROTEIN L6
Chain BF: 60S RIBOSOMAL PROTEIN L7
Chain Be: 60S RIBOSOMAL PROTEIN L32
Chain Bf: 60S RIBOSOMAL PROTEIN L35A
Chain Bt: 60S RIBOSOMAL PROTEIN L28

J3_4UJC_032