J3_4UJC_033

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CCGCGCUCUCCC*GCCACGCGCGC*GGCGGAGCGAG

Length

34 nucleotides

Bulged bases

4UJC|1|A2|G|960, 4UJC|1|A2|U|966, 4UJC|1|A2|C|967, 4UJC|1|A2|C|968, 4UJC|1|A2|C|1216, 4UJC|1|A2|C|1217, 4UJC|1|A2|A|1218, 4UJC|1|A2|G|1224

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|C|958
4UJC|1|A2|C|959
4UJC|1|A2|G|960
4UJC|1|A2|C|961
4UJC|1|A2|G|962
4UJC|1|A2|C|963
4UJC|1|A2|U|964
4UJC|1|A2|C|965
4UJC|1|A2|U|966
4UJC|1|A2|C|967
4UJC|1|A2|C|968
4UJC|1|A2|C|969
*
4UJC|1|A2|G|1215
4UJC|1|A2|C|1216
4UJC|1|A2|C|1217
4UJC|1|A2|A|1218
4UJC|1|A2|C|1219
4UJC|1|A2|G|1220
4UJC|1|A2|C|1221
4UJC|1|A2|G|1222
4UJC|1|A2|C|1223
4UJC|1|A2|G|1224
4UJC|1|A2|C|1225
*
4UJC|1|A2|G|1245
4UJC|1|A2|G|1246
4UJC|1|A2|C|1247
4UJC|1|A2|G|1248
4UJC|1|A2|G|1249
4UJC|1|A2|A|1250
4UJC|1|A2|G|1251
4UJC|1|A2|C|1252
4UJC|1|A2|G|1253
4UJC|1|A2|A|1254
4UJC|1|A2|G|1255

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BC

60S RIBOSOMAL PROTEIN L4

Chain BF

60S RIBOSOMAL PROTEIN L7