J3_4UJC_039

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GGCGGAGAUGGGC*GUCCAGU*AGGGUGUAAAUCUC

Length

34 nucleotides

Bulged bases

4UJC|1|A2|A|2528, 4UJC|1|A2|G|2551, 4UJC|1|A2|G|2736, 4UJC|1|A2|G|2739

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|G|2523
4UJC|1|A2|G|2524
4UJC|1|A2|C|2525
4UJC|1|A2|G|2526
4UJC|1|A2|G|2527
4UJC|1|A2|A|2528
4UJC|1|A2|G|2529
4UJC|1|A2|A|2530
4UJC|1|A2|U|2531
4UJC|1|A2|G|2532
4UJC|1|A2|G|2533
4UJC|1|A2|G|2534
4UJC|1|A2|C|2535
*
4UJC|1|A2|G|2546
4UJC|1|A2|U|2547
4UJC|1|A2|C|2548
4UJC|1|A2|C|2549
4UJC|1|A2|A|2550
4UJC|1|A2|G|2551
4UJC|1|A2|U|2552
*
4UJC|1|A2|A|2734
4UJC|1|A2|G|2735
4UJC|1|A2|G|2736
4UJC|1|A2|G|2737
4UJC|1|A2|U|2738
4UJC|1|A2|G|2739
4UJC|1|A2|U|2740
4UJC|1|A2|A|2741
4UJC|1|A2|A|2742
4UJC|1|A2|A|2743
4UJC|1|A2|U|2744
4UJC|1|A2|C|2745
4UJC|1|A2|U|2746
4UJC|1|A2|C|2747

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BZ

60S RIBOSOMAL PROTEIN L27

Chain Bg

60S RIBOSOMAL PROTEIN L34

Chain Bk

60S RIBOSOMAL PROTEIN L38