J3_4UJC_041

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

ACGGUG*CACUGACC*GGGACAGU

Length

22 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|A|3905
4UJC|1|A2|C|3906
4UJC|1|A2|G|3907
4UJC|1|A2|G|3908
4UJC|1|A2|U|3909
4UJC|1|A2|G|3910
*
4UJC|1|A2|C|4040
4UJC|1|A2|A|4041
4UJC|1|A2|C|4042
4UJC|1|A2|U|4043
4UJC|1|A2|G|4044
4UJC|1|A2|A|4045
4UJC|1|A2|C|4046
4UJC|1|A2|C|4047
*
4UJC|1|A2|G|4127
4UJC|1|A2|G|4128
4UJC|1|A2|G|4129
4UJC|1|A2|A|4130
4UJC|1|A2|C|4131
4UJC|1|A2|A|4132
4UJC|1|A2|G|4133
4UJC|1|A2|U|4134

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BA

60S RIBOSOMAL PROTEIN L8

Chain BG

60S RIBOSOMAL PROTEIN L7A

Chain BN

60S RIBOSOMAL PROTEIN L15

Chain Bi

60S RIBOSOMAL PROTEIN L36