J3_4UJC_042
3D structure
- PDB id
- 4UJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.5 Å
Loop
- Sequence
- GUGAGGCGGGGGGGCG*CUCGCUUCUGGCGCCAAG*CGACCCGCUC
- Length
- 44 nucleotides
- Bulged bases
- 4UJC|1|A2|G|4052, 4UJC|1|A2|G|4054, 4UJC|1|A2|G|4055, 4UJC|1|A2|G|4063, 4UJC|1|A2|G|4082, 4UJC|1|A2|C|4083, 4UJC|1|A2|U|4084, 4UJC|1|A2|U|4085, 4UJC|1|A2|C|4086, 4UJC|1|A2|U|4087, 4UJC|1|A2|G|4088, 4UJC|1|A2|C|4092, 4UJC|1|A2|C|4093, 4UJC|1|A2|C|4122, 4UJC|1|A2|U|4123
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJC|1|A2|G|4050
4UJC|1|A2|U|4051
4UJC|1|A2|G|4052
4UJC|1|A2|A|4053
4UJC|1|A2|G|4054
4UJC|1|A2|G|4055
4UJC|1|A2|C|4056
4UJC|1|A2|G|4057
4UJC|1|A2|G|4058
4UJC|1|A2|G|4059
4UJC|1|A2|G|4060
4UJC|1|A2|G|4061
4UJC|1|A2|G|4062
4UJC|1|A2|G|4063
4UJC|1|A2|C|4064
4UJC|1|A2|G|4065
*
4UJC|1|A2|C|4079
4UJC|1|A2|U|4080
4UJC|1|A2|C|4081
4UJC|1|A2|G|4082
4UJC|1|A2|C|4083
4UJC|1|A2|U|4084
4UJC|1|A2|U|4085
4UJC|1|A2|C|4086
4UJC|1|A2|U|4087
4UJC|1|A2|G|4088
4UJC|1|A2|G|4089
4UJC|1|A2|C|4090
4UJC|1|A2|G|4091
4UJC|1|A2|C|4092
4UJC|1|A2|C|4093
4UJC|1|A2|A|4094
4UJC|1|A2|A|4095
4UJC|1|A2|G|4096
*
4UJC|1|A2|C|4115
4UJC|1|A2|G|4116
4UJC|1|A2|A|4117
4UJC|1|A2|C|4118
4UJC|1|A2|C|4119
4UJC|1|A2|C|4120
4UJC|1|A2|G|4121
4UJC|1|A2|C|4122
4UJC|1|A2|U|4123
4UJC|1|A2|C|4124
Current chains
- Chain A2
- 28S RIBOSOMAL RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BA
- 60S RIBOSOMAL PROTEIN L8
- Chain BG
- 60S RIBOSOMAL PROTEIN L7A
- Chain BX
- 60S RIBOSOMAL PROTEIN L23A
- Chain BZ
- 60S RIBOSOMAL PROTEIN L27
- Chain Bc
- 60S RIBOSOMAL PROTEIN L30
- Chain Bg
- 60S RIBOSOMAL PROTEIN L34
- Chain Bp
- 60S RIBOSOMAL PROTEIN L37A
Coloring options: