J3_4UJC_043

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CUCAG*CGUGGAG*CAAAAG

Length

18 nucleotides

Bulged bases

4UJC|1|A2|A|4240, 4UJC|1|A2|A|4242

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|C|4201
4UJC|1|A2|U|4202
4UJC|1|A2|C|4203
4UJC|1|A2|A|4204
4UJC|1|A2|G|4205
*
4UJC|1|A2|C|4223
4UJC|1|A2|G|4224
4UJC|1|A2|U|4225
4UJC|1|A2|G|4226
4UJC|1|A2|G|4227
4UJC|1|A2|A|4228
4UJC|1|A2|G|4229
*
4UJC|1|A2|C|4238
4UJC|1|A2|A|4239
4UJC|1|A2|A|4240
4UJC|1|A2|A|4241
4UJC|1|A2|A|4242
4UJC|1|A2|G|4243

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AA

Transfer RNA; tRNA

Chain BD

60S RIBOSOMAL PROTEIN L5

Chain BJ

60S RIBOSOMAL PROTEIN L11

Chain BT

60S RIBOSOMAL PROTEIN L21