J3_4UJC_044

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

CGGUUG*CCUUCG*CGCACCGCACGUUCGUG

Length

29 nucleotides

Bulged bases

4UJC|1|A2|U|4711, 4UJC|1|A2|U|4712, 4UJC|1|A2|U|4837, 4UJC|1|A2|A|4893, 4UJC|1|A2|C|4894, 4UJC|1|A2|C|4895, 4UJC|1|A2|G|4896, 4UJC|1|A2|C|4897, 4UJC|1|A2|G|4900, 4UJC|1|A2|U|4901, 4UJC|1|A2|U|4902, 4UJC|1|A2|C|4903

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|C|4708
4UJC|1|A2|G|4709
4UJC|1|A2|G|4710
4UJC|1|A2|U|4711
4UJC|1|A2|U|4712
4UJC|1|A2|G|4713
*
4UJC|1|A2|C|4834
4UJC|1|A2|C|4835
4UJC|1|A2|U|4836
4UJC|1|A2|U|4837
4UJC|1|A2|C|4838
4UJC|1|A2|G|4839
*
4UJC|1|A2|C|4890
4UJC|1|A2|G|4891
4UJC|1|A2|C|4892
4UJC|1|A2|A|4893
4UJC|1|A2|C|4894
4UJC|1|A2|C|4895
4UJC|1|A2|G|4896
4UJC|1|A2|C|4897
4UJC|1|A2|A|4898
4UJC|1|A2|C|4899
4UJC|1|A2|G|4900
4UJC|1|A2|U|4901
4UJC|1|A2|U|4902
4UJC|1|A2|C|4903
4UJC|1|A2|G|4904
4UJC|1|A2|U|4905
4UJC|1|A2|G|4906

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BE

60S RIBOSOMAL PROTEIN L6

Chain BM

60S RIBOSOMAL PROTEIN L14

Chain BO

60S RIBOSOMAL PROTEIN L13A

Chain Bf

60S RIBOSOMAL PROTEIN L35A