J3_4UJC_046

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

AGAGU*GCAG*CUGGAU

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|C1|A|816
4UJC|1|C1|G|817
4UJC|1|C1|A|818
4UJC|1|C1|G|819
4UJC|1|C1|U|820
*
4UJC|1|C1|G|828
4UJC|1|C1|C|829
4UJC|1|C1|A|830
4UJC|1|C1|G|831
*
4UJC|1|C1|C|843
4UJC|1|C1|U|844
4UJC|1|C1|G|845
4UJC|1|C1|G|846
4UJC|1|C1|A|847
4UJC|1|C1|U|848

Current chains

Chain C1

18S RIBOSOMAL RNA

Nearby chains

Chain CE

40S RIBOSOMAL PROTEIN ES4

Chain CJ

40S RIBOSOMAL PROTEIN US4

Chain CY

40S RIBOSOMAL PROTEIN ES24