J3_4UJC_056

3D structure

PDB id

4UJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B POST-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UU*AGAAGC*GGUGGA

Length

14 nucleotides

Bulged bases

4UJC|1|A2|A|1784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJC|1|A2|U|1705
4UJC|1|A2|U|1706
*
4UJC|1|A2|A|1781
4UJC|1|A2|G|1782
4UJC|1|A2|A|1783
4UJC|1|A2|A|1784
4UJC|1|A2|G|1785
4UJC|1|A2|C|1786
*
4UJC|1|A2|G|1810
4UJC|1|A2|G|1811
4UJC|1|A2|U|1812
4UJC|1|A2|G|1813
4UJC|1|A2|G|1814
4UJC|1|A2|A|1815

Current chains

Chain A2

28S RIBOSOMAL RNA

Nearby chains

Chain BF

60S RIBOSOMAL PROTEIN L7

Chain BT

60S RIBOSOMAL PROTEIN L21

Chain Bb

60S RIBOSOMAL PROTEIN L29