J3_4UJD_019
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UUGG*UAAGA*UAA
- Length
- 12 nucleotides
- Bulged bases
- 4UJD|1|C1|G|921
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|C1|U|681
4UJD|1|C1|U|682
4UJD|1|C1|G|683
4UJD|1|C1|G|684
*
4UJD|1|C1|U|918
4UJD|1|C1|A|919
4UJD|1|C1|A|920
4UJD|1|C1|G|921
4UJD|1|C1|A|922
*
4UJD|1|C1|U|1022
4UJD|1|C1|A|1023
4UJD|1|C1|A|1024
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain CH
- 40S RIBOSOMAL PROTEIN ES7
- Chain CL
- 40S RIBOSOMAL PROTEIN US17
- Chain CN
- 40S RIBOSOMAL PROTEIN ES15
- Chain CW
- 40S RIBOSOMAL PROTEIN US8
- Chain CX
- 40S RIBOSOMAL PROTEIN US12
- Chain Cb
- 40S RIBOSOMAL PROTEIN ES27
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