J3_4UJD_021
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 4UJD|1|C1|G|991
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UJD_021 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.2329
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
4UJD|1|C1|A|938
4UJD|1|C1|U|939
4UJD|1|C1|U|940
4UJD|1|C1|C|941
*
4UJD|1|C1|G|985
4UJD|1|C1|G|986
4UJD|1|C1|A|987
4UJD|1|C1|C|988
4UJD|1|C1|C|989
4UJD|1|C1|A|990
4UJD|1|C1|G|991
4UJD|1|C1|A|992
4UJD|1|C1|G|993
*
4UJD|1|C1|C|1000
4UJD|1|C1|A|1001
4UJD|1|C1|U|1002
4UJD|1|C1|U|1003
4UJD|1|C1|U|1004
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain Ap
- 60S RIBOSOMAL PROTEIN L37A
- Chain CB
- 40S RIBOSOMAL PROTEIN ES1
- Chain CN
- 40S RIBOSOMAL PROTEIN ES15
- Chain CO
- 40S RIBOSOMAL PROTEIN ES11
- Chain Ca
- 40S RIBOSOMAL PROTEIN ES26
Coloring options: