J3_4UJD_024
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CUUAAUUUG*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 4UJD|1|C1|A|1260
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|C1|C|1237
4UJD|1|C1|U|1238
4UJD|1|C1|U|1239
4UJD|1|C1|A|1240
4UJD|1|C1|A|1241
4UJD|1|C1|U|1242
4UJD|1|C1|U|1243
4UJD|1|C1|U|1244
4UJD|1|C1|G|1245
*
4UJD|1|C1|C|1254
4UJD|1|C1|G|1255
4UJD|1|C1|G|1256
4UJD|1|C1|G|1257
4UJD|1|C1|A|1258
4UJD|1|C1|A|1259
4UJD|1|C1|A|1260
4UJD|1|C1|C|1261
4UJD|1|C1|C|1262
4UJD|1|C1|U|1263
4UJD|1|C1|C|1264
4UJD|1|C1|A|1265
4UJD|1|C1|C|1266
*
4UJD|1|C1|G|1516
4UJD|1|C1|G|1517
4UJD|1|C1|C|1518
4UJD|1|C1|U|1519
4UJD|1|C1|G|1520
Current chains
- Chain C1
- 18S Ribosomal RNA
Nearby chains
- Chain CP
- 40S RIBOSOMAL PROTEIN US19
- Chain CQ
- 40S RIBOSOMAL PROTEIN US9
- Chain CS
- 40S RIBOSOMAL PROTEIN US13
- Chain CU
- 40S RIBOSOMAL PROTEIN US10
- Chain Cd
- 40S RIBOSOMAL PROTEIN US14
Coloring options: