J3_4UJD_027

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UG*UGUCUG*CGAUAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|C1|U|1350
4UJD|1|C1|G|1351
*
4UJD|1|C1|U|1360
4UJD|1|C1|G|1361
4UJD|1|C1|U|1362
4UJD|1|C1|C|1363
4UJD|1|C1|U|1364
4UJD|1|C1|G|1365
*
4UJD|1|C1|C|1374
4UJD|1|C1|G|1375
4UJD|1|C1|A|1376
4UJD|1|C1|U|1377
4UJD|1|C1|A|1378
4UJD|1|C1|A|1379

Current chains

Chain C1

18S Ribosomal RNA

Nearby chains

Chain CA

40S RIBOSOMAL PROTEIN US2

Chain CC

40S RIBOSOMAL PROTEIN US5

Chain CR

40S RIBOSOMAL PROTEIN ES17

Chain Ca

40S RIBOSOMAL PROTEIN ES26