J3_4UJD_029
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- UUGAAAAG*CGUGAAACCG*CGGUGGAUCA
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|A2|U|371
4UJD|1|A2|U|372
4UJD|1|A2|G|373
4UJD|1|A2|A|374
4UJD|1|A2|A|375
4UJD|1|A2|A|376
4UJD|1|A2|A|377
4UJD|1|A2|G|378
*
4UJD|1|A2|C|405
4UJD|1|A2|G|406
4UJD|1|A2|U|407
4UJD|1|A2|G|408
4UJD|1|A2|A|409
4UJD|1|A2|A|410
4UJD|1|A2|A|411
4UJD|1|A2|C|412
4UJD|1|A2|C|413
4UJD|1|A2|G|414
*
4UJD|1|A3|C|11
4UJD|1|A3|G|12
4UJD|1|A3|G|13
4UJD|1|A3|U|14
4UJD|1|A3|G|15
4UJD|1|A3|G|16
4UJD|1|A3|A|17
4UJD|1|A3|U|18
4UJD|1|A3|C|19
4UJD|1|A3|A|20
Current chains
- Chain A2
- 28S Ribosomal RNA
- Chain A3
- 5.8S Ribosomal RNA
Nearby chains
- Chain AC
- 60S RIBOSOMAL PROTEIN L4
- Chain AP
- 60S RIBOSOMAL PROTEIN L17
- Chain AY
- 60S RIBOSOMAL PROTEIN L26
- Chain Ae
- 60S RIBOSOMAL PROTEIN L32
- Chain Al
- 60S RIBOSOMAL PROTEIN L39
Coloring options: