J3_4UJD_031

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGGUCCGCGCAGUCC*GGUGCG*CGACGUCGGCUACC

Length

35 nucleotides

Bulged bases

4UJD|1|A2|U|436, 4UJD|1|A2|G|441, 4UJD|1|A2|C|1281, 4UJD|1|A2|U|1282, 4UJD|1|A2|A|1283

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|433
4UJD|1|A2|G|434
4UJD|1|A2|G|435
4UJD|1|A2|U|436
4UJD|1|A2|C|437
4UJD|1|A2|C|438
4UJD|1|A2|G|439
4UJD|1|A2|C|440
4UJD|1|A2|G|441
4UJD|1|A2|C|442
4UJD|1|A2|A|443
4UJD|1|A2|G|444
4UJD|1|A2|U|445
4UJD|1|A2|C|446
4UJD|1|A2|C|447
*
4UJD|1|A2|G|688
4UJD|1|A2|G|689
4UJD|1|A2|U|690
4UJD|1|A2|G|691
4UJD|1|A2|C|692
4UJD|1|A2|G|693
*
4UJD|1|A2|C|1272
4UJD|1|A2|G|1273
4UJD|1|A2|A|1274
4UJD|1|A2|C|1275
4UJD|1|A2|G|1276
4UJD|1|A2|U|1277
4UJD|1|A2|C|1278
4UJD|1|A2|G|1279
4UJD|1|A2|G|1280
4UJD|1|A2|C|1281
4UJD|1|A2|U|1282
4UJD|1|A2|A|1283
4UJD|1|A2|C|1284
4UJD|1|A2|C|1285

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain AE

60S RIBOSOMAL PROTEIN L6

Chain Ae

60S RIBOSOMAL PROTEIN L32

Chain Af

60S RIBOSOMAL PROTEIN L35A

Chain At

60S RIBOSOMAL PROTEIN L28