J3_4UJD_033

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCGCGCUCUCCC*GCCACGCGCGC*GGCGGAGCGAG

Length

34 nucleotides

Bulged bases

4UJD|1|A2|G|960, 4UJD|1|A2|U|966, 4UJD|1|A2|C|967, 4UJD|1|A2|C|968, 4UJD|1|A2|C|1216, 4UJD|1|A2|C|1217, 4UJD|1|A2|A|1218, 4UJD|1|A2|G|1224

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|958
4UJD|1|A2|C|959
4UJD|1|A2|G|960
4UJD|1|A2|C|961
4UJD|1|A2|G|962
4UJD|1|A2|C|963
4UJD|1|A2|U|964
4UJD|1|A2|C|965
4UJD|1|A2|U|966
4UJD|1|A2|C|967
4UJD|1|A2|C|968
4UJD|1|A2|C|969
*
4UJD|1|A2|G|1215
4UJD|1|A2|C|1216
4UJD|1|A2|C|1217
4UJD|1|A2|A|1218
4UJD|1|A2|C|1219
4UJD|1|A2|G|1220
4UJD|1|A2|C|1221
4UJD|1|A2|G|1222
4UJD|1|A2|C|1223
4UJD|1|A2|G|1224
4UJD|1|A2|C|1225
*
4UJD|1|A2|G|1245
4UJD|1|A2|G|1246
4UJD|1|A2|C|1247
4UJD|1|A2|G|1248
4UJD|1|A2|G|1249
4UJD|1|A2|A|1250
4UJD|1|A2|G|1251
4UJD|1|A2|C|1252
4UJD|1|A2|G|1253
4UJD|1|A2|A|1254
4UJD|1|A2|G|1255

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AF

60S RIBOSOMAL PROTEIN L7