J3_4UJD_036

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

UU*AGAAGCC*GGGUGGA

Length

16 nucleotides

Bulged bases

4UJD|1|A2|A|1784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|U|1705
4UJD|1|A2|U|1706
*
4UJD|1|A2|A|1781
4UJD|1|A2|G|1782
4UJD|1|A2|A|1783
4UJD|1|A2|A|1784
4UJD|1|A2|G|1785
4UJD|1|A2|C|1786
4UJD|1|A2|C|1787
*
4UJD|1|A2|G|1809
4UJD|1|A2|G|1810
4UJD|1|A2|G|1811
4UJD|1|A2|U|1812
4UJD|1|A2|G|1813
4UJD|1|A2|G|1814
4UJD|1|A2|A|1815

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AF

60S RIBOSOMAL PROTEIN L7

Chain AT

60S RIBOSOMAL PROTEIN L21

Chain Ab

60S RIBOSOMAL PROTEIN L29