J3_4UJD_038
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- GAGAUGG*CGUUCCGAAGGGACGG*CCUCGGCCGAUC
- Length
- 35 nucleotides
- Bulged bases
- 4UJD|1|A2|G|2432, 4UJD|1|A2|U|2445, 4UJD|1|A2|C|2446, 4UJD|1|A2|C|2447, 4UJD|1|A2|G|2448, 4UJD|1|A2|A|2449, 4UJD|1|A2|C|2455, 4UJD|1|A2|G|2480, 4UJD|1|A2|C|2481
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|A2|G|2427
4UJD|1|A2|A|2428
4UJD|1|A2|G|2429
4UJD|1|A2|A|2430
4UJD|1|A2|U|2431
4UJD|1|A2|G|2432
4UJD|1|A2|G|2433
*
4UJD|1|A2|C|2442
4UJD|1|A2|G|2443
4UJD|1|A2|U|2444
4UJD|1|A2|U|2445
4UJD|1|A2|C|2446
4UJD|1|A2|C|2447
4UJD|1|A2|G|2448
4UJD|1|A2|A|2449
4UJD|1|A2|A|2450
4UJD|1|A2|G|2451
4UJD|1|A2|G|2452
4UJD|1|A2|G|2453
4UJD|1|A2|A|2454
4UJD|1|A2|C|2455
4UJD|1|A2|G|2456
4UJD|1|A2|G|2457
*
4UJD|1|A2|C|2475
4UJD|1|A2|C|2476
4UJD|1|A2|U|2477
4UJD|1|A2|C|2478
4UJD|1|A2|G|2479
4UJD|1|A2|G|2480
4UJD|1|A2|C|2481
4UJD|1|A2|C|2482
4UJD|1|A2|G|2483
4UJD|1|A2|A|2484
4UJD|1|A2|U|2485
4UJD|1|A2|C|2486
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain A3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AA
- 60S RIBOSOMAL PROTEIN L8
- Chain AG
- 60S RIBOSOMAL PROTEIN L7A
- Chain AN
- 60S RIBOSOMAL PROTEIN L15
- Chain AX
- 60S RIBOSOMAL PROTEIN L23A
- Chain Aj
- 60S RIBOSOMAL PROTEIN L37
Coloring options: