J3_4UJD_039

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

GGCGGAGAUGGGC*GUCCAGU*AGGGUGUAAAUCUC

Length

34 nucleotides

Bulged bases

4UJD|1|A2|A|2528, 4UJD|1|A2|G|2551, 4UJD|1|A2|G|2736, 4UJD|1|A2|G|2739

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|G|2523
4UJD|1|A2|G|2524
4UJD|1|A2|C|2525
4UJD|1|A2|G|2526
4UJD|1|A2|G|2527
4UJD|1|A2|A|2528
4UJD|1|A2|G|2529
4UJD|1|A2|A|2530
4UJD|1|A2|U|2531
4UJD|1|A2|G|2532
4UJD|1|A2|G|2533
4UJD|1|A2|G|2534
4UJD|1|A2|C|2535
*
4UJD|1|A2|G|2546
4UJD|1|A2|U|2547
4UJD|1|A2|C|2548
4UJD|1|A2|C|2549
4UJD|1|A2|A|2550
4UJD|1|A2|G|2551
4UJD|1|A2|U|2552
*
4UJD|1|A2|A|2734
4UJD|1|A2|G|2735
4UJD|1|A2|G|2736
4UJD|1|A2|G|2737
4UJD|1|A2|U|2738
4UJD|1|A2|G|2739
4UJD|1|A2|U|2740
4UJD|1|A2|A|2741
4UJD|1|A2|A|2742
4UJD|1|A2|A|2743
4UJD|1|A2|U|2744
4UJD|1|A2|C|2745
4UJD|1|A2|U|2746
4UJD|1|A2|C|2747

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AZ

60S RIBOSOMAL PROTEIN L27

Chain Ag

60S RIBOSOMAL PROTEIN L34

Chain Ak

60S RIBOSOMAL PROTEIN L38