J3_4UJD_041

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

ACGGUG*CACUGACC*GGGACAGU

Length

22 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|A|3905
4UJD|1|A2|C|3906
4UJD|1|A2|G|3907
4UJD|1|A2|G|3908
4UJD|1|A2|U|3909
4UJD|1|A2|G|3910
*
4UJD|1|A2|C|4040
4UJD|1|A2|A|4041
4UJD|1|A2|C|4042
4UJD|1|A2|U|4043
4UJD|1|A2|G|4044
4UJD|1|A2|A|4045
4UJD|1|A2|C|4046
4UJD|1|A2|C|4047
*
4UJD|1|A2|G|4127
4UJD|1|A2|G|4128
4UJD|1|A2|G|4129
4UJD|1|A2|A|4130
4UJD|1|A2|C|4131
4UJD|1|A2|A|4132
4UJD|1|A2|G|4133
4UJD|1|A2|U|4134

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AA

60S RIBOSOMAL PROTEIN L8

Chain AG

60S RIBOSOMAL PROTEIN L7A

Chain AN

60S RIBOSOMAL PROTEIN L15

Chain Ai

60S RIBOSOMAL PROTEIN L36