J3_4UJD_043

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUCAG*CGUGGAG*CAAAAG

Length

18 nucleotides

Bulged bases

4UJD|1|A2|A|4240, 4UJD|1|A2|A|4242

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|4201
4UJD|1|A2|U|4202
4UJD|1|A2|C|4203
4UJD|1|A2|A|4204
4UJD|1|A2|G|4205
*
4UJD|1|A2|C|4223
4UJD|1|A2|G|4224
4UJD|1|A2|U|4225
4UJD|1|A2|G|4226
4UJD|1|A2|G|4227
4UJD|1|A2|A|4228
4UJD|1|A2|G|4229
*
4UJD|1|A2|C|4238
4UJD|1|A2|A|4239
4UJD|1|A2|A|4240
4UJD|1|A2|A|4241
4UJD|1|A2|A|4242
4UJD|1|A2|G|4243

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AD

60S RIBOSOMAL PROTEIN L5

Chain AJ

60S RIBOSOMAL PROTEIN L11

Chain AT

60S RIBOSOMAL PROTEIN L21