J3_4UJD_044

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CGGUUG*CCUUCG*CGCACCGCACGUUCGUG

Length

29 nucleotides

Bulged bases

4UJD|1|A2|U|4711, 4UJD|1|A2|U|4712, 4UJD|1|A2|U|4837, 4UJD|1|A2|A|4893, 4UJD|1|A2|C|4894, 4UJD|1|A2|C|4895, 4UJD|1|A2|G|4896, 4UJD|1|A2|C|4897, 4UJD|1|A2|G|4900, 4UJD|1|A2|U|4901, 4UJD|1|A2|U|4902, 4UJD|1|A2|C|4903

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|4708
4UJD|1|A2|G|4709
4UJD|1|A2|G|4710
4UJD|1|A2|U|4711
4UJD|1|A2|U|4712
4UJD|1|A2|G|4713
*
4UJD|1|A2|C|4834
4UJD|1|A2|C|4835
4UJD|1|A2|U|4836
4UJD|1|A2|U|4837
4UJD|1|A2|C|4838
4UJD|1|A2|G|4839
*
4UJD|1|A2|C|4890
4UJD|1|A2|G|4891
4UJD|1|A2|C|4892
4UJD|1|A2|A|4893
4UJD|1|A2|C|4894
4UJD|1|A2|C|4895
4UJD|1|A2|G|4896
4UJD|1|A2|C|4897
4UJD|1|A2|A|4898
4UJD|1|A2|C|4899
4UJD|1|A2|G|4900
4UJD|1|A2|U|4901
4UJD|1|A2|U|4902
4UJD|1|A2|C|4903
4UJD|1|A2|G|4904
4UJD|1|A2|U|4905
4UJD|1|A2|G|4906

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AE

60S RIBOSOMAL PROTEIN L6

Chain AM

60S RIBOSOMAL PROTEIN L14

Chain AO

60S RIBOSOMAL PROTEIN L13A

Chain Af

60S RIBOSOMAL PROTEIN L35A