J3_4UJD_045

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CAUUCG*CCUGCUUCUG*CAAG

Length

20 nucleotides

Bulged bases

4UJD|1|A2|U|4946

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|4925
4UJD|1|A2|A|4926
4UJD|1|A2|U|4927
4UJD|1|A2|U|4928
4UJD|1|A2|C|4929
4UJD|1|A2|G|4930
*
4UJD|1|A2|C|4938
4UJD|1|A2|C|4939
4UJD|1|A2|U|4940
4UJD|1|A2|G|4941
4UJD|1|A2|C|4942
4UJD|1|A2|U|4943
4UJD|1|A2|U|4944
4UJD|1|A2|C|4945
4UJD|1|A2|U|4946
4UJD|1|A2|G|4947
*
4UJD|1|A2|C|5014
4UJD|1|A2|A|5015
4UJD|1|A2|A|5016
4UJD|1|A2|G|5017

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AB

60S RIBOSOMAL PROTEIN L3

Chain AP

60S RIBOSOMAL PROTEIN L17

Chain Ad

60S RIBOSOMAL PROTEIN L31