Loop J3_4UJD

3D structure

PDB id: 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
Description: mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
Experimental method: ELECTRON MICROSCOPY
Resolution: 8.9 Å

Loop

Sequence: UUGAAAAGAACUUU*AGAGAGUUCAAGAGGGCGUGAAAC*GUGGAUCA
Length: 46 nucleotides
Bulged bases: 4UJD|1|A2|A|380, 4UJD|1|A2|G|400, 4UJD|1|A2|G|404
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4UJD|1|A2|U|371
4UJD|1|A2|U|372
4UJD|1|A2|G|373
4UJD|1|A2|A|374
4UJD|1|A2|A|375
4UJD|1|A2|A|376
4UJD|1|A2|A|377
4UJD|1|A2|G|378
4UJD|1|A2|A|379
4UJD|1|A2|A|380
4UJD|1|A2|C|381
4UJD|1|A2|U|382
4UJD|1|A2|U|383
4UJD|1|A2|U|384
*
4UJD|1|A2|A|389
4UJD|1|A2|G|390
4UJD|1|A2|A|391
4UJD|1|A2|G|392
4UJD|1|A2|A|393
4UJD|1|A2|G|394
4UJD|1|A2|U|395
4UJD|1|A2|U|396
4UJD|1|A2|C|397
4UJD|1|A2|A|398
4UJD|1|A2|A|399
4UJD|1|A2|G|400
4UJD|1|A2|A|401
4UJD|1|A2|G|402
4UJD|1|A2|G|403
4UJD|1|A2|G|404
4UJD|1|A2|C|405
4UJD|1|A2|G|406
4UJD|1|A2|U|407
4UJD|1|A2|G|408
4UJD|1|A2|A|409
4UJD|1|A2|A|410
4UJD|1|A2|A|411
4UJD|1|A2|C|412
*
4UJD|1|A3|G|13
4UJD|1|A3|U|14
4UJD|1|A3|G|15
4UJD|1|A3|G|16
4UJD|1|A3|A|17
4UJD|1|A3|U|18
4UJD|1|A3|C|19
4UJD|1|A3|A|20

Current chains

Chain A2: 28S Ribosomal RNA
Chain A3: 5.8S Ribosomal RNA

Nearby chains

Chain AC: 60S RIBOSOMAL PROTEIN L4
Chain AP: 60S RIBOSOMAL PROTEIN L17
Chain AY: 60S RIBOSOMAL PROTEIN L26
Chain Ae: 60S RIBOSOMAL PROTEIN L32
Chain Al: 60S RIBOSOMAL PROTEIN L39

J3_4UJD_051