J3_4UJD_053
3D structure
- PDB id
- 4UJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.9 Å
Loop
- Sequence
- CGACC*GAGGGAGCGAGACCCGUC*GCACGGGGUCGG
- Length
- 35 nucleotides
- Bulged bases
- 4UJD|1|A2|G|941, 4UJD|1|A2|A|944, 4UJD|1|A2|A|950, 4UJD|1|A2|G|1262
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4UJD|1|A2|C|697
4UJD|1|A2|G|698
4UJD|1|A2|A|699
4UJD|1|A2|C|700
4UJD|1|A2|C|701
*
4UJD|1|A2|G|939
4UJD|1|A2|A|940
4UJD|1|A2|G|941
4UJD|1|A2|G|942
4UJD|1|A2|G|943
4UJD|1|A2|A|944
4UJD|1|A2|G|945
4UJD|1|A2|C|946
4UJD|1|A2|G|947
4UJD|1|A2|A|948
4UJD|1|A2|G|949
4UJD|1|A2|A|950
4UJD|1|A2|C|951
4UJD|1|A2|C|952
4UJD|1|A2|C|953
4UJD|1|A2|G|954
4UJD|1|A2|U|955
4UJD|1|A2|C|956
*
4UJD|1|A2|G|1257
4UJD|1|A2|C|1258
4UJD|1|A2|A|1259
4UJD|1|A2|C|1260
4UJD|1|A2|G|1261
4UJD|1|A2|G|1262
4UJD|1|A2|G|1263
4UJD|1|A2|G|1264
4UJD|1|A2|U|1265
4UJD|1|A2|C|1266
4UJD|1|A2|G|1267
4UJD|1|A2|G|1268
Current chains
- Chain A2
- 28S Ribosomal RNA
Nearby chains
- Chain AC
- 60S RIBOSOMAL PROTEIN L4
- Chain AE
- 60S RIBOSOMAL PROTEIN L6
- Chain AF
- 60S RIBOSOMAL PROTEIN L7
- Chain Ae
- 60S RIBOSOMAL PROTEIN L32
- Chain Af
- 60S RIBOSOMAL PROTEIN L35A
- Chain At
- 60S RIBOSOMAL PROTEIN L28
Coloring options: