J3_4UJD_054

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CCUCC*GGCCAC*GAGGUUCUCUCGG

Length

24 nucleotides

Bulged bases

4UJD|1|A2|U|973, 4UJD|1|A2|A|1202, 4UJD|1|A2|U|1205, 4UJD|1|A2|U|1208, 4UJD|1|A2|C|1209, 4UJD|1|A2|U|1210, 4UJD|1|A2|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|971
4UJD|1|A2|C|972
4UJD|1|A2|U|973
4UJD|1|A2|C|974
4UJD|1|A2|C|975
*
4UJD|1|A2|G|1054
4UJD|1|A2|G|1055
4UJD|1|A2|C|1056
4UJD|1|A2|C|1057
4UJD|1|A2|A|1058
4UJD|1|A2|C|1059
*
4UJD|1|A2|G|1201
4UJD|1|A2|A|1202
4UJD|1|A2|G|1203
4UJD|1|A2|G|1204
4UJD|1|A2|U|1205
4UJD|1|A2|U|1206
4UJD|1|A2|C|1207
4UJD|1|A2|U|1208
4UJD|1|A2|C|1209
4UJD|1|A2|U|1210
4UJD|1|A2|C|1211
4UJD|1|A2|G|1212
4UJD|1|A2|G|1213

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain AC

60S RIBOSOMAL PROTEIN L4

Chain AF

60S RIBOSOMAL PROTEIN L7