J3_4UJD_055

3D structure

PDB id

4UJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Experimental method

ELECTRON MICROSCOPY

Resolution

8.9 Å

Loop

Sequence

CUCCCACC*GGCG*CG

Length

14 nucleotides

Bulged bases

4UJD|1|A2|U|1082, 4UJD|1|A2|C|1083, 4UJD|1|A2|C|1084, 4UJD|1|A2|C|1085, 4UJD|1|A2|A|1086

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJD|1|A2|C|1081
4UJD|1|A2|U|1082
4UJD|1|A2|C|1083
4UJD|1|A2|C|1084
4UJD|1|A2|C|1085
4UJD|1|A2|A|1086
4UJD|1|A2|C|1087
4UJD|1|A2|C|1088
*
4UJD|1|A2|G|1145
4UJD|1|A2|G|1146
4UJD|1|A2|C|1147
4UJD|1|A2|G|1148
*
4UJD|1|A2|C|1173
4UJD|1|A2|G|1174

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AD

60S RIBOSOMAL PROTEIN L5

Chain AS

60S RIBOSOMAL PROTEIN L18A

Chain AT

60S RIBOSOMAL PROTEIN L21