J3_4UJE_030

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGGUCCGCGCAGUCC*GGUGCG*CGACGUCGGCUACC

Length

35 nucleotides

Bulged bases

4UJE|1|A2|U|436, 4UJE|1|A2|G|441, 4UJE|1|A2|C|1281, 4UJE|1|A2|U|1282, 4UJE|1|A2|A|1283

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|G|433
4UJE|1|A2|G|434
4UJE|1|A2|G|435
4UJE|1|A2|U|436
4UJE|1|A2|C|437
4UJE|1|A2|C|438
4UJE|1|A2|G|439
4UJE|1|A2|C|440
4UJE|1|A2|G|441
4UJE|1|A2|C|442
4UJE|1|A2|A|443
4UJE|1|A2|G|444
4UJE|1|A2|U|445
4UJE|1|A2|C|446
4UJE|1|A2|C|447
*
4UJE|1|A2|G|688
4UJE|1|A2|G|689
4UJE|1|A2|U|690
4UJE|1|A2|G|691
4UJE|1|A2|C|692
4UJE|1|A2|G|693
*
4UJE|1|A2|C|1272
4UJE|1|A2|G|1273
4UJE|1|A2|A|1274
4UJE|1|A2|C|1275
4UJE|1|A2|G|1276
4UJE|1|A2|U|1277
4UJE|1|A2|C|1278
4UJE|1|A2|G|1279
4UJE|1|A2|G|1280
4UJE|1|A2|C|1281
4UJE|1|A2|U|1282
4UJE|1|A2|A|1283
4UJE|1|A2|C|1284
4UJE|1|A2|C|1285

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A3

5.8S ribosomal RNA; 5.8S rRNA

Chain CE

60S RIBOSOMAL PROTEIN L6

Chain Ce

60S RIBOSOMAL PROTEIN L32

Chain Cf

60S RIBOSOMAL PROTEIN L35A

Chain Ct

60S RIBOSOMAL PROTEIN L28