J3_4UJE_032

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCGCGCUCUCCC*GCCACGCGCGC*GGCGGAGCGAG

Length

34 nucleotides

Bulged bases

4UJE|1|A2|G|960, 4UJE|1|A2|U|966, 4UJE|1|A2|C|967, 4UJE|1|A2|C|968, 4UJE|1|A2|C|1216, 4UJE|1|A2|C|1217, 4UJE|1|A2|A|1218, 4UJE|1|A2|G|1224

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|C|958
4UJE|1|A2|C|959
4UJE|1|A2|G|960
4UJE|1|A2|C|961
4UJE|1|A2|G|962
4UJE|1|A2|C|963
4UJE|1|A2|U|964
4UJE|1|A2|C|965
4UJE|1|A2|U|966
4UJE|1|A2|C|967
4UJE|1|A2|C|968
4UJE|1|A2|C|969
*
4UJE|1|A2|G|1215
4UJE|1|A2|C|1216
4UJE|1|A2|C|1217
4UJE|1|A2|A|1218
4UJE|1|A2|C|1219
4UJE|1|A2|G|1220
4UJE|1|A2|C|1221
4UJE|1|A2|G|1222
4UJE|1|A2|C|1223
4UJE|1|A2|G|1224
4UJE|1|A2|C|1225
*
4UJE|1|A2|G|1245
4UJE|1|A2|G|1246
4UJE|1|A2|C|1247
4UJE|1|A2|G|1248
4UJE|1|A2|G|1249
4UJE|1|A2|A|1250
4UJE|1|A2|G|1251
4UJE|1|A2|C|1252
4UJE|1|A2|G|1253
4UJE|1|A2|A|1254
4UJE|1|A2|G|1255

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CC

60S RIBOSOMAL PROTEIN L4

Chain CF

60S RIBOSOMAL PROTEIN L7