J3_4UJE_038

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGCGGAGAUGGGC*GUCCAGU*AGGGUGUAAAUCUC

Length

34 nucleotides

Bulged bases

4UJE|1|A2|A|2528, 4UJE|1|A2|G|2551, 4UJE|1|A2|G|2736, 4UJE|1|A2|G|2739

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|G|2523
4UJE|1|A2|G|2524
4UJE|1|A2|C|2525
4UJE|1|A2|G|2526
4UJE|1|A2|G|2527
4UJE|1|A2|A|2528
4UJE|1|A2|G|2529
4UJE|1|A2|A|2530
4UJE|1|A2|U|2531
4UJE|1|A2|G|2532
4UJE|1|A2|G|2533
4UJE|1|A2|G|2534
4UJE|1|A2|C|2535
*
4UJE|1|A2|G|2546
4UJE|1|A2|U|2547
4UJE|1|A2|C|2548
4UJE|1|A2|C|2549
4UJE|1|A2|A|2550
4UJE|1|A2|G|2551
4UJE|1|A2|U|2552
*
4UJE|1|A2|A|2734
4UJE|1|A2|G|2735
4UJE|1|A2|G|2736
4UJE|1|A2|G|2737
4UJE|1|A2|U|2738
4UJE|1|A2|G|2739
4UJE|1|A2|U|2740
4UJE|1|A2|A|2741
4UJE|1|A2|A|2742
4UJE|1|A2|A|2743
4UJE|1|A2|U|2744
4UJE|1|A2|C|2745
4UJE|1|A2|U|2746
4UJE|1|A2|C|2747

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CZ

60S RIBOSOMAL PROTEIN L27

Chain Cg

60S RIBOSOMAL PROTEIN L34

Chain Ck

60S RIBOSOMAL PROTEIN L38