J3_4UJE_042

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUCAG*CGUGGAG*CAAAAG

Length

18 nucleotides

Bulged bases

4UJE|1|A2|A|4240, 4UJE|1|A2|A|4242

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|C|4201
4UJE|1|A2|U|4202
4UJE|1|A2|C|4203
4UJE|1|A2|A|4204
4UJE|1|A2|G|4205
*
4UJE|1|A2|C|4223
4UJE|1|A2|G|4224
4UJE|1|A2|U|4225
4UJE|1|A2|G|4226
4UJE|1|A2|G|4227
4UJE|1|A2|A|4228
4UJE|1|A2|G|4229
*
4UJE|1|A2|C|4238
4UJE|1|A2|A|4239
4UJE|1|A2|A|4240
4UJE|1|A2|A|4241
4UJE|1|A2|A|4242
4UJE|1|A2|G|4243

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain AV

Transfer RNA; tRNA

Chain CD

60S RIBOSOMAL PROTEIN L5

Chain CJ

60S RIBOSOMAL PROTEIN L11

Chain CT

60S RIBOSOMAL PROTEIN L21