J3_4UJE_043

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGGUUG*CCUUCG*CGCACCGCACGUUCGUG

Length

29 nucleotides

Bulged bases

4UJE|1|A2|U|4711, 4UJE|1|A2|U|4712, 4UJE|1|A2|U|4837, 4UJE|1|A2|A|4893, 4UJE|1|A2|C|4894, 4UJE|1|A2|C|4895, 4UJE|1|A2|G|4896, 4UJE|1|A2|C|4897, 4UJE|1|A2|G|4900, 4UJE|1|A2|U|4901, 4UJE|1|A2|U|4902, 4UJE|1|A2|C|4903

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|C|4708
4UJE|1|A2|G|4709
4UJE|1|A2|G|4710
4UJE|1|A2|U|4711
4UJE|1|A2|U|4712
4UJE|1|A2|G|4713
*
4UJE|1|A2|C|4834
4UJE|1|A2|C|4835
4UJE|1|A2|U|4836
4UJE|1|A2|U|4837
4UJE|1|A2|C|4838
4UJE|1|A2|G|4839
*
4UJE|1|A2|C|4890
4UJE|1|A2|G|4891
4UJE|1|A2|C|4892
4UJE|1|A2|A|4893
4UJE|1|A2|C|4894
4UJE|1|A2|C|4895
4UJE|1|A2|G|4896
4UJE|1|A2|C|4897
4UJE|1|A2|A|4898
4UJE|1|A2|C|4899
4UJE|1|A2|G|4900
4UJE|1|A2|U|4901
4UJE|1|A2|U|4902
4UJE|1|A2|C|4903
4UJE|1|A2|G|4904
4UJE|1|A2|U|4905
4UJE|1|A2|G|4906

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CE

60S RIBOSOMAL PROTEIN L6

Chain CM

60S RIBOSOMAL PROTEIN L14

Chain CO

60S RIBOSOMAL PROTEIN L13A

Chain Cf

60S RIBOSOMAL PROTEIN L35A