Loop J3_4UJE

3D structure

PDB id: 4UJE (explore in PDB, NAKB, or RNA 3D Hub)
Description: Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement
Experimental method: ELECTRON MICROSCOPY
Resolution: 6.9 Å

Loop

Sequence: UUGAAAAGAACUUU*AGAGAGUUCAAGAGGGCGUGAAAC*GUGGAUCA
Length: 46 nucleotides
Bulged bases: 4UJE|1|A2|A|380, 4UJE|1|A2|G|400, 4UJE|1|A2|G|404
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4UJE|1|A2|U|371
4UJE|1|A2|U|372
4UJE|1|A2|G|373
4UJE|1|A2|A|374
4UJE|1|A2|A|375
4UJE|1|A2|A|376
4UJE|1|A2|A|377
4UJE|1|A2|G|378
4UJE|1|A2|A|379
4UJE|1|A2|A|380
4UJE|1|A2|C|381
4UJE|1|A2|U|382
4UJE|1|A2|U|383
4UJE|1|A2|U|384
*
4UJE|1|A2|A|389
4UJE|1|A2|G|390
4UJE|1|A2|A|391
4UJE|1|A2|G|392
4UJE|1|A2|A|393
4UJE|1|A2|G|394
4UJE|1|A2|U|395
4UJE|1|A2|U|396
4UJE|1|A2|C|397
4UJE|1|A2|A|398
4UJE|1|A2|A|399
4UJE|1|A2|G|400
4UJE|1|A2|A|401
4UJE|1|A2|G|402
4UJE|1|A2|G|403
4UJE|1|A2|G|404
4UJE|1|A2|C|405
4UJE|1|A2|G|406
4UJE|1|A2|U|407
4UJE|1|A2|G|408
4UJE|1|A2|A|409
4UJE|1|A2|A|410
4UJE|1|A2|A|411
4UJE|1|A2|C|412
*
4UJE|1|A3|G|13
4UJE|1|A3|U|14
4UJE|1|A3|G|15
4UJE|1|A3|G|16
4UJE|1|A3|A|17
4UJE|1|A3|U|18
4UJE|1|A3|C|19
4UJE|1|A3|A|20

Current chains

Chain A2: 28S Ribosomal RNA
Chain A3: 5.8S Ribosomal RNA

Nearby chains

Chain CC: 60S RIBOSOMAL PROTEIN L4
Chain CP: 60S RIBOSOMAL PROTEIN L17
Chain CY: 60S RIBOSOMAL PROTEIN L26
Chain Ce: 60S RIBOSOMAL PROTEIN L32
Chain Cl: 60S RIBOSOMAL PROTEIN L39

J3_4UJE_050