J3_4UJE_052

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGACC*GAGGGAGCGAGACCCGUC*GCACGGGGUCGG

Length

35 nucleotides

Bulged bases

4UJE|1|A2|G|941, 4UJE|1|A2|A|944, 4UJE|1|A2|A|950, 4UJE|1|A2|G|1262

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|C|697
4UJE|1|A2|G|698
4UJE|1|A2|A|699
4UJE|1|A2|C|700
4UJE|1|A2|C|701
*
4UJE|1|A2|G|939
4UJE|1|A2|A|940
4UJE|1|A2|G|941
4UJE|1|A2|G|942
4UJE|1|A2|G|943
4UJE|1|A2|A|944
4UJE|1|A2|G|945
4UJE|1|A2|C|946
4UJE|1|A2|G|947
4UJE|1|A2|A|948
4UJE|1|A2|G|949
4UJE|1|A2|A|950
4UJE|1|A2|C|951
4UJE|1|A2|C|952
4UJE|1|A2|C|953
4UJE|1|A2|G|954
4UJE|1|A2|U|955
4UJE|1|A2|C|956
*
4UJE|1|A2|G|1257
4UJE|1|A2|C|1258
4UJE|1|A2|A|1259
4UJE|1|A2|C|1260
4UJE|1|A2|G|1261
4UJE|1|A2|G|1262
4UJE|1|A2|G|1263
4UJE|1|A2|G|1264
4UJE|1|A2|U|1265
4UJE|1|A2|C|1266
4UJE|1|A2|G|1267
4UJE|1|A2|G|1268

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CC

60S RIBOSOMAL PROTEIN L4

Chain CE

60S RIBOSOMAL PROTEIN L6

Chain CF

60S RIBOSOMAL PROTEIN L7

Chain Ce

60S RIBOSOMAL PROTEIN L32

Chain Cf

60S RIBOSOMAL PROTEIN L35A

Chain Ct

60S RIBOSOMAL PROTEIN L28