J3_4UJE_053

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CCUCC*GGCCAC*GAGGUUCUCUCGG

Length

24 nucleotides

Bulged bases

4UJE|1|A2|U|973, 4UJE|1|A2|A|1202, 4UJE|1|A2|U|1205, 4UJE|1|A2|U|1208, 4UJE|1|A2|C|1209, 4UJE|1|A2|U|1210, 4UJE|1|A2|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|C|971
4UJE|1|A2|C|972
4UJE|1|A2|U|973
4UJE|1|A2|C|974
4UJE|1|A2|C|975
*
4UJE|1|A2|G|1054
4UJE|1|A2|G|1055
4UJE|1|A2|C|1056
4UJE|1|A2|C|1057
4UJE|1|A2|A|1058
4UJE|1|A2|C|1059
*
4UJE|1|A2|G|1201
4UJE|1|A2|A|1202
4UJE|1|A2|G|1203
4UJE|1|A2|G|1204
4UJE|1|A2|U|1205
4UJE|1|A2|U|1206
4UJE|1|A2|C|1207
4UJE|1|A2|U|1208
4UJE|1|A2|C|1209
4UJE|1|A2|U|1210
4UJE|1|A2|C|1211
4UJE|1|A2|G|1212
4UJE|1|A2|G|1213

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain CC

60S RIBOSOMAL PROTEIN L4

Chain CF

60S RIBOSOMAL PROTEIN L7