J3_4UJE_054

3D structure

PDB id

4UJE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUCCCACC*GGCG*CG

Length

14 nucleotides

Bulged bases

4UJE|1|A2|U|1082, 4UJE|1|A2|C|1083, 4UJE|1|A2|C|1084, 4UJE|1|A2|C|1085, 4UJE|1|A2|A|1086

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4UJE|1|A2|C|1081
4UJE|1|A2|U|1082
4UJE|1|A2|C|1083
4UJE|1|A2|C|1084
4UJE|1|A2|C|1085
4UJE|1|A2|A|1086
4UJE|1|A2|C|1087
4UJE|1|A2|C|1088
*
4UJE|1|A2|G|1145
4UJE|1|A2|G|1146
4UJE|1|A2|C|1147
4UJE|1|A2|G|1148
*
4UJE|1|A2|C|1173
4UJE|1|A2|G|1174

Current chains

Chain A2

28S Ribosomal RNA

Nearby chains

Chain A4

5S ribosomal RNA; 5S rRNA

Chain CD

60S RIBOSOMAL PROTEIN L5

Chain CS

60S RIBOSOMAL PROTEIN L18A

Chain CT

60S RIBOSOMAL PROTEIN L21