J3_4UY8_001

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4UY8|1|A|U|686, 4UY8|1|A|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UY8_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0717

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4UY8|1|A|U|683
4UY8|1|A|G|684
4UY8|1|A|A|685
4UY8|1|A|U|686
4UY8|1|A|C|687
4UY8|1|A|U|688
4UY8|1|A|A|689
*
4UY8|1|A|U|773
4UY8|1|A|G|774
4UY8|1|A|G|775
*
4UY8|1|A|C|791
4UY8|1|A|A|792
4UY8|1|A|A|793
4UY8|1|A|A|794

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain C

50S RIBOSOMAL PROTEIN L2