J3_4UY8_008

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

4UY8|1|A|A|2518, 4UY8|1|A|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UY8_008 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0589

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4UY8|1|A|C|2517
4UY8|1|A|A|2518
4UY8|1|A|U|2519
4UY8|1|A|C|2520
*
4UY8|1|A|G|2545
4UY8|1|A|U|2546
4UY8|1|A|A|2547
*
4UY8|1|A|U|2561
4UY8|1|A|U|2562
4UY8|1|A|U|2563
4UY8|1|A|A|2564
4UY8|1|A|A|2565
4UY8|1|A|A|2566
4UY8|1|A|G|2567

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain D

50S RIBOSOMAL PROTEIN L3

Chain K

50S RIBOSOMAL PROTEIN L14