J3_4UY8_013

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UY8_013 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1069

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

4UY8|1|A|U|1344
4UY8|1|A|C|1345
4UY8|1|A|G|1346
4UY8|1|A|A|1347
4UY8|1|A|C|1348
4UY8|1|A|C|1349
*
4UY8|1|A|G|1382
4UY8|1|A|A|1383
4UY8|1|A|A|1384
4UY8|1|A|A|1385
*
4UY8|1|A|U|1402
4UY8|1|A|A|1403

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain T

50S RIBOSOMAL PROTEIN L23