J3_4UY8_017

3D structure

PDB id

4UY8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

4UY8|1|A|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4UY8_017 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0649

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4UY8|1|A|G|297
4UY8|1|A|G|298
4UY8|1|A|A|299
4UY8|1|A|A|300
4UY8|1|A|G|301
*
4UY8|1|A|C|316
4UY8|1|A|G|317
4UY8|1|A|C|318
4UY8|1|A|G|319
4UY8|1|A|A|320
4UY8|1|A|U|321
4UY8|1|A|A|322
4UY8|1|A|C|323
4UY8|1|A|A|324
4UY8|1|A|G|325
*
4UY8|1|A|C|337
4UY8|1|A|G|338
4UY8|1|A|U|339
4UY8|1|A|A|340
4UY8|1|A|C|341

Current chains

Chain A

RRNA-23S RIBOSOMAL RNA

Nearby chains

Chain E

50S RIBOSOMAL PROTEIN L4

Chain U

50S RIBOSOMAL PROTEIN L24