J3_4UY8_020
3D structure
- PDB id
- 4UY8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular basis for the ribosome functioning as a L-tryptophan sensor - Cryo-EM structure of a TnaC stalled E.coli ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCA*UCAUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4UY8|1|A|A|2388, 4UY8|1|A|U|2390, 4UY8|1|A|A|2426
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4UY8_020 not in the Motif Atlas
- Homologous match to J3_5J7L_070
- Geometric discrepancy: 0.0776
- The information below is about J3_5J7L_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20992.1
- Basepair signature
- cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
4UY8|1|A|G|2282
4UY8|1|A|C|2283
4UY8|1|A|A|2284
*
4UY8|1|A|U|2384
4UY8|1|A|C|2385
4UY8|1|A|A|2386
4UY8|1|A|U|2387
4UY8|1|A|A|2388
4UY8|1|A|G|2389
4UY8|1|A|U|2390
4UY8|1|A|G|2391
4UY8|1|A|A|2392
4UY8|1|A|U|2393
4UY8|1|A|C|2394
4UY8|1|A|C|2395
*
4UY8|1|A|G|2421
4UY8|1|A|C|2422
4UY8|1|A|U|2423
4UY8|1|A|C|2424
4UY8|1|A|A|2425
4UY8|1|A|A|2426
4UY8|1|A|C|2427
Current chains
- Chain A
- RRNA-23S RIBOSOMAL RNA
Nearby chains
- Chain 1
- 50S RIBOSOMAL PROTEIN L33
- Chain 3
- 50S RIBOSOMAL PROTEIN L35
- Chain L
- 50S RIBOSOMAL PROTEIN L15
- Chain W
- 50S RIBOSOMAL PROTEIN L27
Coloring options: