J3_4V19_002

3D structure

PDB id

4V19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the mammalian mitoribosome, part 1 of 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAG*CCAAC*GAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V19_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.2014

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V19|1|A|C|265
4V19|1|A|A|266
4V19|1|A|G|267
*
4V19|1|A|C|278
4V19|1|A|C|279
4V19|1|A|A|280
4V19|1|A|A|281
4V19|1|A|C|282
*
4V19|1|A|G|306
4V19|1|A|A|307
4V19|1|A|A|308
4V19|1|A|G|309

Current chains

Chain A

MITORIBOSOMAL 16S RRNA

Nearby chains

Chain D

MITORIBOSOMAL PROTEIN UL2M, MRPL2