J3_4V19_008

3D structure

PDB id

4V19 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the large subunit of the mammalian mitoribosome, part 1 of 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUAAAUCUUAAUACUACCAU*AUUGAG*CAACAAAUUCACCAACAUAAUCCCAAAAACUAAUAACAAAC

Length

67 nucleotides

Bulged bases

4V19|1|A|C|487, 4V19|1|A|U|492, 4V19|1|A|U|552, 4V19|1|A|C|556, 4V19|1|A|C|559, 4V19|1|A|U|564, 4V19|1|A|A|572, 4V19|1|A|C|573, 4V19|1|A|U|574, 4V19|1|A|A|575, 4V19|1|A|U|577, 4V19|1|A|A|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V19|1|A|G|481
4V19|1|A|U|482
4V19|1|A|A|483
4V19|1|A|A|484
4V19|1|A|A|485
4V19|1|A|U|486
4V19|1|A|C|487
4V19|1|A|U|488
4V19|1|A|U|489
4V19|1|A|A|490
4V19|1|A|A|491
4V19|1|A|U|492
4V19|1|A|A|493
4V19|1|A|C|494
4V19|1|A|U|495
4V19|1|A|A|496
4V19|1|A|C|497
4V19|1|A|C|498
4V19|1|A|A|499
4V19|1|A|U|500
*
4V19|1|A|A|524
4V19|1|A|U|525
4V19|1|A|U|526
4V19|1|A|G|527
4V19|1|A|A|528
4V19|1|A|G|529
*
4V19|1|A|C|544
4V19|1|A|A|545
4V19|1|A|A|546
4V19|1|A|C|547
4V19|1|A|A|548
4V19|1|A|A|549
4V19|1|A|A|550
4V19|1|A|U|551
4V19|1|A|U|552
4V19|1|A|C|553
4V19|1|A|A|554
4V19|1|A|C|555
4V19|1|A|C|556
4V19|1|A|A|557
4V19|1|A|A|558
4V19|1|A|C|559
4V19|1|A|A|560
4V19|1|A|U|561
4V19|1|A|A|562
4V19|1|A|A|563
4V19|1|A|U|564
4V19|1|A|C|565
4V19|1|A|C|566
4V19|1|A|C|567
4V19|1|A|A|568
4V19|1|A|A|569
4V19|1|A|A|570
4V19|1|A|A|571
4V19|1|A|A|572
4V19|1|A|C|573
4V19|1|A|U|574
4V19|1|A|A|575
4V19|1|A|A|576
4V19|1|A|U|577
4V19|1|A|A|578
4V19|1|A|A|579
4V19|1|A|C|580
4V19|1|A|A|581
4V19|1|A|A|582
4V19|1|A|A|583
4V19|1|A|C|584

Current chains

Chain A

MITORIBOSOMAL 16S RRNA

Nearby chains

Chain 3

MITORIBOSOMAL PROTEIN UL30M, MRPL30

Chain 9

MITORIBOSOMAL PROTEIN BL36M, MRPL36

Chain E

MITORIBOSOMAL PROTEIN UL3M, MRPL3

Chain J

MITORIBOSOMAL PROTEIN UL10M, MRPL10

Chain K

MITORIBOSOMAL PROTEIN UL11M, MRPL11

Chain N

MITORIBOSOMAL PROTEIN UL13M, MRPL13

Chain Q

MITORIBOSOMAL PROTEIN UL16M, MRPL16

Chain U

MITORIBOSOMAL PROTEIN BL20M, MRPL20

Chain V

MITORIBOSOMAL PROTEIN BL21M, MRPL21