J3_4V49_032

3D structure

PDB id

4V49 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of a Streptomycin Dependent Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

8.7 Å

Loop

Sequence

AC*GAAAAGC*GAUGU

Length

14 nucleotides

Bulged bases

4V49|1|B0|A|70, 4V49|1|B0|A|71, 4V49|1|B0|A|72, 4V49|1|B0|A|73

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V49_032 not in the Motif Atlas

Homologous match to J3_5J7L_037

Geometric discrepancy: 0.5364

The information below is about J3_5J7L_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4V49|1|B0|A|55
4V49|1|B0|C|56
*
4V49|1|B0|G|69
4V49|1|B0|A|70
4V49|1|B0|A|71
4V49|1|B0|A|72
4V49|1|B0|A|73
4V49|1|B0|G|74
4V49|1|B0|C|75
*
4V49|1|B0|G|108
4V49|1|B0|A|109
4V49|1|B0|U|110
4V49|1|B0|G|111
4V49|1|B0|U|112

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BR

50S ribosomal protein L23

Chain BW

50S ribosomal protein L29