J3_4V4A_030

3D structure

PDB id

4V4A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

9.5 Å

Loop

Sequence

GC*GUGAAAAGAAC*GAGUGAAAGAGAACC

Length

28 nucleotides

Bulged bases

4V4A|1|B0|G|514, 4V4A|1|B0|A|518

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4A_030 not in the Motif Atlas

Homologous match to J3_7A0S_015

Geometric discrepancy: 0.3713

The information below is about J3_7A0S_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

4V4A|1|B0|G|30
4V4A|1|B0|C|31
*
4V4A|1|B0|G|485
4V4A|1|B0|U|486
4V4A|1|B0|G|487
4V4A|1|B0|A|488
4V4A|1|B0|A|489
4V4A|1|B0|A|490
4V4A|1|B0|A|491
4V4A|1|B0|G|492
4V4A|1|B0|A|493
4V4A|1|B0|A|494
4V4A|1|B0|C|495
*
4V4A|1|B0|G|506
4V4A|1|B0|A|507
4V4A|1|B0|G|508
4V4A|1|B0|U|509
4V4A|1|B0|G|510
4V4A|1|B0|A|511
4V4A|1|B0|A|512
4V4A|1|B0|A|513
4V4A|1|B0|G|514
4V4A|1|B0|A|515
4V4A|1|B0|G|516
4V4A|1|B0|A|517
4V4A|1|B0|A|518
4V4A|1|B0|C|519
4V4A|1|B0|C|520

Current chains

Chain B0

23S RIBOSOMAL RNA

Nearby chains

Chain BO

50S ribosomal protein L20

Chain BQ

50S ribosomal protein L22

Chain BS

50S ribosomal protein L24