J3_4V4A_031
3D structure
- PDB id
- 4V4A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the Wild Type Ribosome from E. Coli 70S Ribosome.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 9.5 Å
Loop
- Sequence
- CCUG*CGAUAGCGCAUAGUAC*GGAAAG
- Length
- 26 nucleotides
- Bulged bases
- 4V4A|1|B0|U|460, 4V4A|1|B0|U|467
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V4A_031 not in the Motif Atlas
- Homologous match to J3_7A0S_016
- Geometric discrepancy: 0.2956
- The information below is about J3_7A0S_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
4V4A|1|B0|C|32
4V4A|1|B0|C|33
4V4A|1|B0|U|34
4V4A|1|B0|G|35
*
4V4A|1|B0|C|457
4V4A|1|B0|G|458
4V4A|1|B0|A|459
4V4A|1|B0|U|460
4V4A|1|B0|A|461
4V4A|1|B0|G|462
4V4A|1|B0|C|463
4V4A|1|B0|G|464
4V4A|1|B0|C|465
4V4A|1|B0|A|466
4V4A|1|B0|U|467
4V4A|1|B0|A|468
4V4A|1|B0|G|469
4V4A|1|B0|U|470
4V4A|1|B0|A|471
4V4A|1|B0|C|472
*
4V4A|1|B0|G|479
4V4A|1|B0|G|480
4V4A|1|B0|A|481
4V4A|1|B0|A|482
4V4A|1|B0|A|483
4V4A|1|B0|G|484
Current chains
- Chain B0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B2
- 50S ribosomal protein L34
- Chain BC
- 50S ribosomal protein L4
- Chain BO
- 50S ribosomal protein L20
- Chain BR
- 50S ribosomal protein L23
- Chain BS
- 50S ribosomal protein L24
Coloring options: