J3_4V4G_124

3D structure

PDB id

4V4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y.

Experimental method

X-RAY DIFFRACTION

Resolution

11.5 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

4V4G|1|HB|A|2497, 4V4G|1|HB|U|2498

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V4G_124 not in the Motif Atlas

Homologous match to J3_9DFE_017

Geometric discrepancy: 0.3758

The information below is about J3_9DFE_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V4G|1|HB|C|2496
4V4G|1|HB|A|2497
4V4G|1|HB|U|2498
4V4G|1|HB|C|2499
*
4V4G|1|HB|G|2524
4V4G|1|HB|U|2525
4V4G|1|HB|U|2526
*
4V4G|1|HB|A|2540
4V4G|1|HB|U|2541
4V4G|1|HB|U|2542
4V4G|1|HB|A|2543
4V4G|1|HB|A|2544
4V4G|1|HB|A|2545
4V4G|1|HB|G|2546

Current chains

Chain HB

23S RIBOSOMAL RNA

Nearby chains

Chain HE

50S ribosomal protein L3

Chain HK

50S ribosomal protein L13

Chain HL

50S ribosomal protein L14